PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG312500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 278aa    MW: 29263.3 Da    PI: 4.6893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG312500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1955108356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++++q+++Le+ Fe ++++  e++++LA  lgL+ rqV vWFqNrRa++k
  Pavir.6KG312500.1.p  55 KKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWK 108
                          45689************************************************9 PP

2HD-ZIP_I/II132.41.6e-4254146193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls++qv++LE+sFe+e+kLeperK++la +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e
  Pavir.6KG312500.1.p  54 EKKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDTLLAE 143
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Pavir.6KG312500.1.p 144 IKE 146
                          987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1941112IPR009057Homeodomain-like
PROSITE profilePS5007117.0750110IPR001356Homeobox domain
SMARTSM003897.9E-1853114IPR001356Homeobox domain
CDDcd000867.64E-1855111No hitNo description
PfamPF000463.0E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1957117IPR009057Homeodomain-like
PRINTSPR000312.6E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000312.6E-590106IPR000047Helix-turn-helix motif
PfamPF021831.2E-17110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKRPNSSVSG GGGGGSGSPG LLPPVVHSDD GFGGVGVEEA DEDMVLCGGG GGGEKKRRLS  60
TDQVRALERS FETENKLEPE RKARLALDLG LQPRQVAVWF QNRRARWKTK QLERDYAALR  120
HSYDALRADH DALRRDKDTL LAEIKELKAK LGDEDAAASF SSVKEEPAAS GVEPPAAAAQ  180
GSSDSDSSGV VNDADMMAAP EKASVHPPAG AAAGAEALVP GAALHHGEVF FHGHPLKVED  240
DEAAFLGDDD AACGGFFADL QPPPSLPWWT EPTEHWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985ERKARLA
2102110RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.16231e-138callus| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918720.0FP091872.1 Phyllostachys edulis cDNA clone: bphylf046i13, full insert sequence.
GenBankFP0923980.0FP092398.1 Phyllostachys edulis cDNA clone: bphylf024g13, full insert sequence.
GenBankFP0944210.0FP094421.1 Phyllostachys edulis cDNA clone: bphylf034o12, full insert sequence.
GenBankFP0957960.0FP095796.1 Phyllostachys edulis cDNA clone: bphylf053b02, full insert sequence.
GenBankFP0963140.0FP096314.1 Phyllostachys edulis cDNA clone: bphylf059i02, full insert sequence.
GenBankFP0972080.0FP097208.1 Phyllostachys edulis cDNA clone: bphylf060f04, full insert sequence.
GenBankFP0985540.0FP098554.1 Phyllostachys edulis cDNA clone: bphyst007g13, full insert sequence.
GenBankFP0999550.0FP099955.1 Phyllostachys edulis cDNA clone: bphyst012d13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973728.11e-132PREDICTED: homeobox-leucine zipper protein HOX20
SwissprotA2YWC01e-117HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-117HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLK3YJ121e-132K3YJ12_SETIT; Uncharacterized protein
STRINGSi014231m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-40homeobox protein 16